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| Geographical names | Botanical scientific names | Biblical names | Nicknames | Institution names |
| Historical names | Zoological scientific names | Fictitious names | Pseudonyms |
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| Scientific Name | Malagasy Name |
| Echinochloa colona | ahibary, akatambivy, varimbivihy, voloandro |
| Eclipta erecta | aimarana |
| Ehretia antsingyae | hazondomohina |
| Eichhornia crassipes | jasintandrano, ramanjaka, savamanipaka, tetezambato, tsikafonkafombazaha, tsinkafonkafombazaha, tsinkafonkafona |
| Ekebergia suavis | tsiramiramy |
| Elaeis guineensis var. | tsingilo |
| Elaeocarpus alnifolius | madio, nantonengitra, sahana, sanalahy, vananalahy, voanana |
| Elaeodendron humbertii | fanindravina, tsinefo |
| Elaphoglossum sp. | lelanomby |
| Eleocharis baronii | harefo |
| Eleusine africana | tsimpimpina, tsipipina |
| Eliea articulata | elana, haronganala, hela, helana |
| Elionurus tristis | ahitsorohitra, kofafa |
| Embelia barbeyana | kipongololo, kisira |
| Emilia adscendens | anampoza, ravintsarahazo, tsiontsiondahy |
| Entada abyssinica | fany, sikily |
| Enterospermum madagascariense | masanjoana, masinjany, masinjoana, masonjana |
| Epallage anemonifolia | angea, angeha, marovelena |
| Epilobium salignum | kivarahina |
| Equisetum elongatum | kitohitohy |
| Eragrostis aethiopica | ahipilo |
| Eremolaena humblotiana | fotona, hamaninaombilahy |
| Erigeron naudinii | kelivoloina, tovondrongonindrakalagegy |
| Eriobotrya japonica | bibasy, voambibasy |
| Eriocaulon bifistulosum | kisangandranovavy |
| Eriochloa meyeriana | karanga |
| Eriosema procumbens | avokombiby, foko, kimaogaga, kofolona |
| Erythrina sacleuxii | monongo |
| Erythrophleum couminga | kimanga, komanga, kominga |
| Erythrophysa aesculina | andibohitse |
| Erythrostelechia pauciflora | malambovony |
| Erythroxylum amplifolium | menanivana |
| Ethulia conyzoides | homandra, kelihomandra, kelimifodra, lelamenarana, sitrakovoampery, tangentsahona |
| Eucalyptus amygdalina | kininina |
| Eugenia alaotrensis | rotra |
| Eulalia villosa | mafaibaratra, vodikongo |
| Eulesine incana | ahidrindrina |
| Eulophiella elisabethae | tsipelana |
| Euodia balankazo | balankazo, fatraina |
| Eupatorium triplinerve | ahiapana |
| Euphorbia alcicornis | tsiankoditra |
| Evolvulus alsinoides | handrinamboa, horompetaka, vahimpasika |
| Evonymopsis longipes | fatindronono, maroiravy, tsihonjonina |
| Exacum emirnense | maitsoririnina, mangavelona, tamborilahy |
| A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | - | Z |
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